PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC11033_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 126aa    MW: 14489 Da    PI: 4.7286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC11033_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-1364115155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++++h  +Er+RR+++N+ +  Lr+l+P     + k+ + a+i   +veYI++Lq
  RrC11033_p1  64 QKMSHVNVERNRRKQMNEHLTVLRSLMPCF---YVKRGDQASIIGGVVEYISELQ 115
                  6899*************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.25E-1161119No hitNo description
SuperFamilySSF474592.75E-1762124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-1462118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.14863114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-1164115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-1169120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MAASTPKDGT TSSKELVKNQ NYETSSPKKK RKRLETGKEE EEEEEEEDED GEGEEEDNKQ  60
DGQQKMSHVN VERNRRKQMN EHLTVLRSLM PCFYVKRGDQ ASIIGGVVEY ISELQQVLQS  120
LEAKKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12633PKKKRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304981e-113AJ630498.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At5g53210.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726806.12e-66PREDICTED: transcription factor SPEECHLESS-like
SwissprotQ700C72e-62SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A078FND92e-66A0A078FND9_BRANA; BnaA10g06580D protein
STRINGBra003073.1-P9e-65(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.11e-62bHLH family protein